CESSHIV-1 database

General information on HIV-1 isolate

# 616

Accession number	DQ351217
Name	04ZASK171B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	171B1

DQ351217 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtatc tagagatccc tcagaccaac tttggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta agaccagagg agatctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy