CESSHIV-1 database

General information on HIV-1 isolate

# 682

Accession number	DQ445635
Name	03ZAPS116MB1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	116MB

DQ445635 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccaat tttggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta agaccagagg agatctctcg acgcaggac

Isolates with identical sequences of region:

DQ164106(#543) DQ351231(#630)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy