CESSHIV-1 database

General information on HIV-1 isolate

# 683

Accession number	DQ445636
Name	04ZAPS178MB1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	178MB

DQ445636 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtgg ctctggtaac tagagatccc tcagaccttt tgtggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa aacgaaagta agaccagagg agatctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy