CESSHIV-1 database

General information on HIV-1 isolate

# 918

Accession number	EF029069
Name	U.NL.01.H10986_C11
Subtype	U
Country	Netherlands
Sampling year	2001
Patient	H10986

EF029069 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccatt ctagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta agaccagaga agttctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy