CESSHIV-1 database

General information on HIV-1 isolate

# 1740

Accession number	EF370273
Name	00KMH12_2732
Subtype	B
Country	South Korea
Sampling year	2000
Patient	KMH

EF370273 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagacacct ttagtcagtg tggaaaatct ctagaagtgg cgcccgaaca gggacgtgaa agcgaaagta gaaccggagg agctctcttg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy