CESSHIV-1 database

General information on HIV-1 isolate

# 2254

Accession number	EF370287
Name	03YJN10c_2677s1
Subtype	B
Country	South Korea
Sampling year	2003
Patient	YJN

EF370287 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggacccgaa aacgaaagta gaaccagagg agctctctcg acgcagg

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy