CESSHIV-1 database

General information on HIV-1 isolate

# 1878

Accession number	EU047682
Name	07SYD2_3188
Subtype	B Korean
Country	South Korea
Sampling year	2007
Patient	SYD

EU047682 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccatt ttagtcagtg tggaaaattc tctagcagtg gcgcccgaac agggacgcga aagcgaaagt agaaccagag gagctctctc gacgcaggac 

Isolates with identical sequences of region:

EU047683(#1879)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy