CESSHIV-1 database

General information on HIV-1 isolate

# 2351

Accession number	FJ614934
Name	99MHI12_5013
Subtype	CRF02_AG
Country	South Korea (Africa)
Sampling year	1999
Patient	MHI

FJ614934 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccatt ctagcttggg ta-aaaatctc tagcagtggc gcccgaacag ggacttgaag ttaataggga ctcgaaagcg aaagtt---ccag agaagctctc tcgacgcagg gac

Isolates with identical sequences of region:

FJ614932(#2349) FJ614933(#2350)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing PBS domain

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy