CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3174
Accession number FJ670524
Name X2400-3
SubtypeB
CountrySpain
Sampling year 2008
PatientX2400

FJ670524 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtgr ctctggtaac tagagatccc tcagaccact ctagatagtg ta-aaaatctc tagcagtggc gcccggacag ggacttgaaa gcgaaagtta acagggactc gaaagcgaaa gttccagaga agttctctcg acgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012