CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3881
Accession number HQ385479
Name N26677
SubtypeCRF49_cpx
CountryGambia
Sampling year 2003

HQ385479 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgtggtgtga ctctggtagc tagagatccc tcagaccact ctagacggtg ta-aaaatctc tagcagtggc gcccgaacag ggactcgaaa acgaaagtaa ggccagaaaa gatctctcga cgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012