CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 8
Accession number M22639
Name Z2, Z2Z6
SubtypeD
CountryDRC
Sampling year 1985
PatientZ2Z6

M22639 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagacccct ttagtcagag tggaaaatct ctagcagtgg cgcccgaaca gggacctgaa agcgaaagta gaaccagaga agctctctcg acgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy