CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 5021
Accession number PBS-02RU823
Name 02RU823-PBS-(EU938096/FJ503050)
Subtype
Country
Submitted to NCBI

PBS-02RU823 isolate has foldings of [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtatga ctctggtaac tagagatccc tcagaccact ctaggcggtg ta-aaaatctc tagcagtggc gcccgaacag ggactcgaaa gcgaaagtt---c cagagaagtt ctctcgacgc aagac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy