CESSHIV-1 database

General information on HIV-1 isolate

# 2583

Accession number	U81478
Name	VE24ANEF
Subtype	B
Country	Venezuela
Sampling year	1994
Patient	24

U81478 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagactctt gtagtcagtg tagaaaatct ctagcagtgg cgcccgaaca gggaccctaa agcgaaagag aaaccagagg acatctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy