CESSHIV-1 database

General information on HIV-1 isolate

# 1358

Accession number	AB191668
Name	99ZM5148
Subtype	C
Country	Zambia
Sampling year	1999

AB191668 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctaggtctct cttagtaaac cagatttgaa cctaggagct ctctggctat ctcaggaacc ccctgcttaa acctcaataa agcttgcctt gaaaacttta agtagtgtgt gcccatctgt tatgtgactc tggtaa

Isolates with identical sequences of region:

AB191670(#1360)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy