CESSHIV-1 database

General information on HIV-1 isolate

# 778

Accession number	AB253655
Name	pJPDR1873AE45
Subtype	CRF01_AE
Country	Japan
Submitted to NCBI	2006
Patient	DR1873

AB253655 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct cttgttagac caggtc-gagc ccgggagctc tctggctagc aagggaaccc actgcttaag cctcaataaa gcttgccttg agtgcttaaa gtggtgtgtg cccatttgtg tcaggactct ggtaa

Isolates with identical sequences of region:

AB253635(#758) AB253637(#760) AB253639(#762) AB253641(#764) AB253642(#765) AB253644(#767) AB253646(#769) AB253649(#772) AB253650(#773) AB253652(#775) AB253653(#776) AB253654(#777) AB253656(#779) AB253659(#782) AB253660(#783) AB253661(#784) AB253662(#785) AB253663(#786) AB253664(#787) AB253668(#791)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy