CESSHIV-1 database

General information on HIV-1 isolate

# 863

Accession number	AB253685
Name	pJPDR0492AE34
Subtype	CRF01_AE
Country	Japan
Submitted to NCBI	2006
Patient	NH19-203

AB253685 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct cttgttagac caggtc-gagc ccgggagctc tctggctagc aagggaaccc actgcttaaa gcctcaataa agcttgcctt gagtgcttaa agtggtgtgt gcccgtctgt gttaggactc tggtaa

Isolates with identical sequences of region:

AB052601(#1057) AB052603(#1059) AB052995(#168) AB070352(#163) AB070353(#164) AB220944(#727) AB253684(#862) AB253686(#864) AB253697(#875) AB253700(#878) AB253704(#882) AB253707(#885) AB253708(#886) AB253710(#888) AB253715(#893) AB485652(#2732) BD187399(#1087) U51285(#2505) U51296(#2515)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing Core poly(A) site

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy