CESSHIV-1 database

General information on HIV-1 isolate

# 2755

Accession number	AB485664
Name	BCF-Kita
Subtype	AGKU
Country	DRC
Submitted to NCBI	2009
Patient	KITA

AB485664 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctagttagac cagatctgag cctgggagct ctctggctag ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

AB221125(#732) AB221126(#733) AB485665(#2756) AY610963(#1995) U80511(#2530)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy