CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 402
Accession number AJ271370
Name CM_YBF106
SubtypeGroup N
CountryCameroon
Sampling year 1997
Patient106

AJ271370 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct cttgttagac cagattagag cctgggagct ctctggctag c-agggaaccc actgcttaag cctcaataaa gcttgccttg agagcta-aag tggtgtgtgc ccatccattc ggtaactctg gtac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy