CESSHIV-1 database

General information on HIV-1 isolate

# 535

Accession number	AJ866554
Name	01IC-17395
Subtype	0209
Country	Cote d'Ivoire
Sampling year	2001

AJ866554 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct cttgctagac cagatctgag cctgggagct ctctgactag caggggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

FJ614992(#2404) FJ614994(#2405) FJ614995(#2406) FJ614996(#2407) FJ614998(#2409) FJ614999(#2410) FJ615000(#2411) FJ615001(#2412) FJ615002(#2413)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy