CESSHIV-1 database

General information on HIV-1 isolate

# 3172

Accession number	AY047301
Name	TV013
Subtype	C
Country	South Africa
Sampling year	1998
Patient	TV013

AY047301 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctcggtagac cagatctgag cctgggagct ctctggctat ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgctcta agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

AB191679(#1369)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy