CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 2098
Accession number AY851677
Name SP_LTNP10
SubtypeB
CountrySpain
Submitted to NCBI 2004
PatientLTNP10

AY851677 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

cagggtctct ctggttaaac caaatctaag cctgggagct ctctggctaa ctagggaacc cactgcttaa gcctcaataa agcttgcctc aagtgcttca agtagtgtgt gcccgtctgt tgtgtaactc tggtag

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy