CESSHIV-1 database

General information on HIV-1 isolate

# 2157

Accession number	AY932687
Name	TZLM735
Subtype
Country	Tanzania
Submitted to NCBI	2005
Patient	735

AY932687 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct cttgttagac cagatttgag cctgagagct ctctggctag ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccatctgt tgtg--actctg gtaa

Isolates with identical sequences of region:

AF096654(#1935) AF096657(#1938) AF254689(#1478) AF254721(#1509)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy