CESSHIV-1 database

General information on HIV-1 isolate

# 3459

Accession number	EF125630
Name	AS1M24ltrc2C
Subtype	B
Country	USA
Sampling year	2004
Patient	AS1

EF125630 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctggttagac cagatctgag cctgggagct ctctggctga ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttta agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

AB287364(#930) AB287365(#931) EF125628(#3457) EF125629(#3458) EF370244(#1721) EF370245(#2240) EF370246(#1725) EF370251(#2242) EF370260(#1732) EU047638(#2271) EU047650(#1846) EU047651(#1847) EU047652(#1848) EU047687(#1883) EU047688(#1884) L28916(#2484) U81474(#2579)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy