CESSHIV-1 database

General information on HIV-1 isolate

# 1715

Accession number	EF370214
Name	00LSH3_2881
Subtype	B
Country	South Korea
Sampling year	2000
Patient	LSH

EF370214 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctggttagac cagatcagag cctgggagct ctctggctaa ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttta agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

EF370213(#2234) EF370215(#2235) EF370313(#1761) EF370385(#2262)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy