CESSHIV-1 database

General information on HIV-1 isolate

# 1798

Accession number	EF370372
Name	03LSP2_2268
Subtype	B
Country	South Korea
Sampling year	2003
Patient	LSP

EF370372 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctggttagac cagatctgag cctgggagct ctctggctag ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttta agtagtgtgt gcccgtctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

AB287372(#938) AF042100(#122) AY455780(#397) DQ295193(#570) EF370220(#1716) EF370221(#2236) EF370222(#1717) EF370226(#2238) EF370272(#2248) EF370273(#1740) EF370274(#1741) EF370275(#2249) EF370281(#1742) EF370311(#1759) EF370319(#1764) EF370320(#1765) EF370326(#1770) EF370334(#2260) EF370347(#1785) EU047670(#1868) EU047671(#2843) EU047672(#1869) EU047674(#2273) EU047677(#1871) EU047679(#1875) EU047681(#1877) U81473(#2578)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy