CESSHIV-1 database

General information on HIV-1 isolate

# 3275

Accession number	GQ386787
Name	I5p11
Subtype	B
Country	Spain
Sampling year	1989
Patient	89ES061

GQ386787 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct cttgttagac cagatctgag cctgggagct ctctggctaa ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctat tgtgtgactc tggtag

Isolates with identical sequences of region:

GQ386784(#3272) GQ386785(#3273) GQ386786(#3274) GQ386788(#3276) GQ386789(#3277) GQ386790(#3278) GQ386791(#3279) GQ386792(#3280)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy