CESSHIV-1 database

General information on HIV-1 isolate

# 2569

Accession number	U81464
Name	VE11NEF
Subtype	B
Country	Venezuela
Sampling year	1995
Patient	11

U81464 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Core poly(A) site

The primary sequence:

ctgggtctct ctggttagac cagatctgag cctgggagct ctctggctaa ctagggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccatctgt tgtgtgactc tggtaa

Isolates with identical sequences of region:

EU047665(#2272) U80517(#2536)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy