CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 3454
Accession number DQ287303
Name C64_5_2000
SubtypeB
CountryAustralia
Sampling year 2000
PatientC64

DQ287303 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Complete poly(A) region

The primary sequence:

cgagccctca gatgctgcat ataagcagct gctttctgcc tgtactgagt ctctctggtt agaccagata tgagcctggg agctctctgg ctgaactagg gaacccactg cttaagcctc aataaagctt gccttgagtg cttcaagtag tgtgtgcccg tctgttgtgt gactctggta a

Isolates with identical sequences of region:

DQ287302(#3453)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012