CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1739
Accession number EF370271
Name 05KYR10_2617
SubtypeB
CountrySouth Korea
Sampling year 2005
PatientKYR

EF370271 isolate has foldings of [DIS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Complete poly(A) region

The primary sequence:

cgagccctca gatgctgcat aaaagcagct gctctttgcc tgtactgggt ctctctagtt agaccagatc tgagcctggg agctctctgg ctagctaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc tataagtagt gtgtgcccat ----tgtgtgactc tggtat

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy