CESSHIV-1 database

General information on HIV-1 isolate

# 3143

Accession number	EF592596
Name	A3
Subtype	A
Country	India
Submitted to NCBI	2007

EF592596 isolate has foldings of [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Complete poly(A) region

The primary sequence:

ctaaccctca gatgctgcat ataagcagct gctttgcgct tgtactgggt ctctcttggt agaccagat-t gagcctggga gctctctggc tagcgagaga acccactgct taagcctcaa taaagcttgc cttgagtgct tcaagtagtg tgtgcccgtc tgttgtgtga ctctggtaa

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy