CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1559
Accession number EU047605
Name 01CSR7_3091
SubtypeB
CountrySouth Korea (USA)
Sampling year 2001
PatientHP-21(CSR)

EU047605 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Complete poly(A) region

The primary sequence:

cgagccctca gatgctgcat ataagcagct gctttctgcc tgtactgggt ctctctggtt aaaccagatc taagcctgga agctctctgg ctaactagga aacccactgc ttaagcctca ataaagcttg ccttaagtgc ttcaagtagt gtgtgcccgt ctgttgtgta actctggtaa

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012