CESSHIV-1 database

General information on HIV-1 isolate

# 3322

Accession number	GU733717
Name	N-2
Subtype	B
Country	USA
Sampling year	2009
Patient	patient(36090)

GU733717 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Complete poly(A) region

The primary sequence:

cgagccctca gatgctgcat ataagcagct gctttttgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctagctaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gtgtgcccgt ctgttgtgtg actctggtaa 

Isolates with identical sequences of region:

AB287371(#937) AB480694(#2719) AF042101(#123) AF196714(#1285) AF538304(#1077) AF538307(#1080) AY851681(#2102) GU733713(#3313) GU733714(#3319) GU733715(#3320) GU733716(#3321) M38429(#15) U21135(#29) U80520(#2539) U80525(#2544) U80527(#2546) U80539(#2558) U81454(#2559) U81477(#2582)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing Complete poly(A) region

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy