CESSHIV-1 database

General information on HIV-1 isolate

# 2433

Accession number	L28865
Name	1E5
Subtype	B
Country	USA
Submitted to NCBI	1994
Patient	1

L28865 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing Complete poly(A) region

The primary sequence:

cgagccctca gatgctgcat ataagcagct gctttttgcc tgtactgggt ctctcttgtt agaccagatc cgagcctggg agctctctgg ctaattaggg aacccactgc ttaagcctca ataaaagctt gccttgagtg cttcaagtag tgtgtgccca tctgttgtgt gactctggta g

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy