CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1085
Accession number AX455929
Name 98TV002
SubtypeC
CountryUSA South Africa
Submitted to NCBI 2002
PatientTV002
CommentsPatent

AX455929 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

ccagccctca gatgctgcat ataagcagcg gcttttcgcc tgtactgggt ctctctaggt agaccagatc cgagcctggg agctctctgt ctatctgggg aacccactgc ttaggcctca ataaagcttg ccttgagtgc tctaagtagt gtgtgcccat ctgttgtgtg actctggtaa ctctggtaac tagagatccc tcagaccctt tgtggtagtg tggaaaatct ctagca

Isolates with identical sequences of region:

AY162224(#240) BD437626(#1091)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

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