CESSHIV-1 database

General information on HIV-1 isolate

# 1801

Accession number	EF370383
Name	05KBHn5_2924L
Subtype	B
Country	South Korea
Sampling year	2005
Patient	KBH

EF370383 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

cgaaccctca gatgctgcat ataagcagct gctttctgcc tgtactgggt ctctctggtt agaccagatc agagcctggg agctctctgg ctaactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc tttaagtagt gtgtgcccgt ctgttgcgtg actctggtaa ctagagatcc ctcagaccat tttagtcagt gtggaaaatc tctagca

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing 227 nt 3' terminus

The primary sequence:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy