CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1829
Accession number EU047627
Name 96HYH10_3319
SubtypeB Korean
CountrySouth Korea
Sampling year 1996
PatientHYH

EU047627 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

cgagccctca gatgctgcat aaaagcagct gctttttgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctaactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc tttaagtagt gtgtgcccgt ctgttgtgtg actctggtaa ctagagatcc ctcagaccat tttagtcagt gtggaaaatc tctagca

Isolates with identical sequences of region:

EF370242(#1719) EF370305(#1753) EU047626(#1828) EU047628(#1830) EU047629(#1831) EU047630(#1832) EU047634(#1833) EU047645(#1843)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy