CESSHIV-1 database

General information on HIV-1 isolate

# 2370

Accession number	FJ614951
Name	05MHI10_4085
Subtype	CRF02_AG
Country	South Korea (Africa)
Sampling year	2005
Patient	MHI

FJ614951 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

ctaaccctca gacgctgcat ataagcagct gcttctcgcc tgtactgggt ctctcttgct agaccagatt tgagcctggg agctctctga ctagcagagg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gtgtgcccgt ctgttgtgtg actctggtaa ctagagatcc ctcagaccac tctagcttgg gta-aaaatct ctagca

Isolates with identical sequences of region:

FJ614926(#2343) FJ614931(#2348) FJ614940(#2357)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing 227 nt 3' terminus

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy