CESSHIV-1 database

General information on HIV-1 isolate

# 29

Accession number	U21135
Name	WEAU 1.60
Subtype	B
Country	USA
Sampling year	1990
Patient	WEAU0575

U21135 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing 227 nt 3' terminus

The primary sequence:

cgagccctca gatgctgcat ataagcagct gctttttgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctagctaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gtgtgcccgt ctgttgtgtg actctggtaa ctagagatcc ctcagaccat tttagtcagt gtggaaaatc tctagca

Isolates with identical sequences of region:

AF196714(#1285) GU733713(#3313) GU733714(#3319) GU733715(#3320) GU733716(#3321) GU733717(#3322)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing 227 nt 3' terminus

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy