CESSHIV-1 database

General information on HIV-1 isolate

# 1369

Accession number	AB191679
Name	00ZM-NW13
Subtype	C
Country	Zambia
Sampling year	2000

AB191679 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

tcaaccctca gatgctgcat ataagcagct gcttttcgcc tgtactgggt ctctctcggt agaccagatc tgagcctggg agctctctgg ctatctaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc tctaagtagt gt

Isolates with identical sequences of region:

AY047301(#3172)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy