CESSHIV-1 database

General information on HIV-1 isolate

# 781

Accession number	AB253658
Name	pJPDR1873AE51
Subtype	CRF01_AE
Country	Japan
Submitted to NCBI	2006
Patient	DR1873

AB253658 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ctaaccctca gatgctgcat aaaagcagcc gcttttcgct tgtactgggt ctctcttgat tagaccaggt c-gagcccggg agctctctgg ctagcaaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttaaagtggt gt

Isolates with identical sequences of region:

AB253647(#770) AB253648(#771) AB253651(#774) AB253657(#780)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy