CESSHIV-1 database

General information on HIV-1 isolate

# 810

Accession number	AB254147
Name	p02ZM114C72
Subtype	C
Country	Zambia
Sampling year	2002
Patient	114

AB254147 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

tcaaccctca gatgctgcat ataagcagct gcttttcgcc tgtactgggt ctctctaggt agaccagatc tgagcctgag agctctctgg ctgtctaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc tctaagtagt gt

Isolates with identical sequences of region:

AB254143(#806) AB254144(#807) AB254145(#808) AB254146(#809) AB254150(#813) AB254151(#814) AB254152(#815) AB254153(#816) AB254154(#817)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy