CESSHIV-1 database

General information on HIV-1 isolate

# 958

Accession number	AB289588
Name	p00JPDR2508B60
Subtype	B
Country	Japan
Sampling year	2000
Patient	2508

AB289588 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagccctca gatgctgcat ataaacagcc gctttt-gcct gtactgggtc tctctagtta gaccagatct gagcctggga gctctctggc tagctgggga acccactgct taagcctcaa taaagcttgc cttgagtgct tcaagtagtg t

Isolates with identical sequences of region:

AB289587(#957)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy