CESSHIV-1 database

General information on HIV-1 isolate

# 1491

Accession number	AF254702
Name	NT36_2
Subtype	B
Country	Tanzania
Sampling year	1996
Patient	36

AF254702 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ctaaccctca gatgctgcat ataagcagct gctttttgcc tgtactgggt ctctcttgtt agaccagatc tgagcctggg agctctctag cta----gggaacc cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgt

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy