CESSHIV-1 database

General information on HIV-1 isolate

# 1513

Accession number	AF254726
Name	E33_3
Subtype	C
Country	Tanzania
Sampling year	1996
Patient	33

AF254726 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

tcaaccctca gatgctgcat ataagcagct gcttttcgcc tgtactgggt ctctctaggt ggaccagatc tgagcctggg cgctctctgg ctacctaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc tctgagtagt gt

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy