CESSHIV-1 database

General information on HIV-1 isolate

# 86

Accession number	AF259955
Name	pCM235-4
Subtype	CRF01_AE
Country	Thailand
Sampling year	1990
Patient	CM235

AF259955 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ctaaccctca gatgctgcat aaaagcagcc gcttttcgct tgtactgggt ctctcttgtt agaccaggtc -gagcccggga gctctctggc tagcaaggga acccactgct taaagcctca ataaagcttg ccttgagtgc ttaaagtggt gt

Isolates with identical sequences of region:

AB052603(#1059) AB052995(#168) AB070352(#163) AB070353(#164) AB253686(#864) AB485652(#2732) AF259954(#85) BD187399(#1087) U51284(#2504)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy