CESSHIV-1 database

General information on HIV-1 isolate

# 2151

Accession number	AY932681
Name	TZLMM732
Subtype
Country	Tanzania
Submitted to NCBI	2005
Patient	732

AY932681 isolate has foldings of [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

ccaaccctca gatgctgcat ataagcagct gcttttcgct tgtactgggt ctctctagtt ggaccagatt tgagcctggg agctctctgg ctagctaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc tttaagtagt gt

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy