CESSHIV-1 database

General information on HIV-1 isolate

# 2986

Accession number	DQ287285
Name	C49_11_2001
Subtype	B
Country	Australia
Sampling year	2001
Patient	C49

DQ287285 isolate has foldings of [Core poly(A) site] [USE domain, TAR, polyA] [USE region] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagccctca gatgccgcat ataagcagct gctttctgcc tgtactgggt ctctctggtt ggaccagatc tgagcctggg agctctctgg ctaactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gt

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy