CESSHIV-1 database

General information on HIV-1 isolate

# 3098

Accession number	DQ848385
Name	ib24
Subtype	B
Country	USA
Sampling year	1990
Patient	B-child

DQ848385 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagccctca gatgctgcat ataagcagct gctttctgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctaactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc tttaagtagt gt

Isolates with identical sequences of region:

DQ848365(#3079) DQ848368(#3082) DQ848377(#3091) DQ848379(#3092) DQ848380(#3093) DQ848383(#3096) DQ848386(#3099) U80532(#2551) U81472(#2577)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy