CESSHIV-1 database

General information on HIV-1 isolate

# 3125

Accession number	DQ848413
Name	ic10
Subtype	B
Country	USA
Sampling year	1990
Patient	C-child

DQ848413 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagccctca gatgctgcat ataagcagct gctttttgcc tgtactgggt ctctctagct agaccagatc tgagcctggg agctctctgg ttgactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gt

Isolates with identical sequences of region:

DQ848410(#3122) DQ848412(#3124) DQ848414(#3126) DQ848415(#3127) DQ848417(#3129) DQ848420(#3132) DQ848423(#3060)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy