CESSHIV-1 database

General information on HIV-1 isolate

# 3666

Accession number	DQ848500
Name	mg9
Subtype	B
Country	USA
Sampling year	1990
Patient	G-mother

DQ848500 isolate has foldings of [USE domain, TAR, polyA] [USE region] [USE, TAR, polyA] .

The region encompassing USE domain, TAR, polyA

The primary sequence:

cgagccctca gatgctgcat aaaagcagct gctctttgcc tgtactgggt ctctctggtt agaccagatc tgagcctggg agctctctgg ctaactaggg aacccactgc ttaagcctca ataaagcttg ccttgagtgc ttcaagtagt gt

Isolates with identical sequences of region:

DQ848492(#3658) DQ848493(#3659) DQ848494(#3660) DQ848496(#3662) DQ848497(#3663) DQ848498(#3664) DQ848501(#3667) DQ848502(#3668) DQ848503(#3669)

CESSHIV-1 DATABASE

General information on HIV-1 isolate

The region encompassing USE domain, TAR, polyA

The primary sequence:

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy